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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpA_2Catabolite control protein A. (330 aa)    
Predicted Functional Partners:
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 
 0.833
sacX
Negative regulator of SacY activity.
 
 
 0.810
tycC_2
Tyrocidine synthase 3.
    
 
 0.787
grsB_3
Gramicidin S synthase 2.
    
 
 0.786
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
 
 0.779
ptsH
Phosphocarrier protein HPr.
   
 
 0.769
kdgK_2
2-dehydro-3-deoxygluconokinase.
 
 
 0.766
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.723
pyk_1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.720
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.720
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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