STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpA_2Catabolite control protein A. (330 aa)    
Predicted Functional Partners:
sacX
Negative regulator of SacY activity.
 
  
 0.820
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 
 0.795
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
 
 0.783
kdgK_2
2-dehydro-3-deoxygluconokinase.
 
 
 0.771
grsB_3
Gramicidin S synthase 2.
    
 
 0.685
ptsH
Phosphocarrier protein HPr.
   
 
 0.669
tycC_2
Tyrocidine synthase 3.
    
 
 0.668
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
    
 0.655
bglF_2
PTS system beta-glucoside-specific EIIBCA component.
    
 0.655
bglF_3
PTS system beta-glucoside-specific EIIBCA component.
    
 0.655
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.