STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoR_7Alkaline phosphatase synthesis sensor protein PhoR. (416 aa)    
Predicted Functional Partners:
tcrA
Transcriptional regulatory protein TcrA.
 0.993
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
 0.971
arlR
Response regulator ArlR.
 
 0.966
evgS
Sensor protein EvgS precursor.
 
 0.960
barA_3
Signal transduction histidine-protein kinase BarA.
 
0.959
barA_4
Signal transduction histidine-protein kinase BarA.
 
0.958
rcsC_2
Sensor histidine kinase RcsC.
0.949
phoP_4
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 0.928
zraS_2
Sensor protein ZraS.
 0.917
barA_1
Signal transduction histidine-protein kinase BarA.
 
0.912
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.