lon protein (Clostridium puniceum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

lon

Lon protease. (771 aa)

Predicted Functional Partners:

ugtP

0.555

trmFO

0.549

mnmG_1

0.517

tepA

0.453

ribD_2

0.429

ttuE

0.414

pyk_1

0.414

pyk_2

0.414

OOM71470.1

0.411

OOM82134.1

0.407

Your Current Organism:

Clostridium puniceum

NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OOM71470.1	lon	CLPUN_49370	CLPUN_34870	Hypothetical protein.	Lon protease.	0.411
OOM82134.1	lon	CLPUN_04950	CLPUN_34870	CotJB protein.	Lon protease.	0.407
OOM82134.1	mnmG_1	CLPUN_04950	CLPUN_33720	CotJB protein.	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG.	0.538
OOM82134.1	trmFO	CLPUN_04950	CLPUN_22110	CotJB protein.	methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO.	0.601
lon	OOM71470.1	CLPUN_34870	CLPUN_49370	Lon protease.	Hypothetical protein.	0.411
lon	OOM82134.1	CLPUN_34870	CLPUN_04950	Lon protease.	CotJB protein.	0.407
lon	mnmG_1	CLPUN_34870	CLPUN_33720	Lon protease.	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG.	0.517
lon	pyk_1	CLPUN_34870	CLPUN_14940	Lon protease.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.414
lon	pyk_2	CLPUN_34870	CLPUN_30880	Lon protease.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.414
lon	ribD_2	CLPUN_34870	CLPUN_47970	Lon protease.	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	0.429
lon	tepA	CLPUN_34870	CLPUN_47900	Lon protease.	Translocation-enhancing protein TepA.	0.453
lon	trmFO	CLPUN_34870	CLPUN_22110	Lon protease.	methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO.	0.549
lon	ttuE	CLPUN_34870	CLPUN_04640	Lon protease.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.414
lon	ugtP	CLPUN_34870	CLPUN_50620	Lon protease.	Processive diacylglycerol beta-glucosyltransferase.	0.555
mnmG_1	OOM82134.1	CLPUN_33720	CLPUN_04950	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG.	CotJB protein.	0.538
mnmG_1	lon	CLPUN_33720	CLPUN_34870	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG.	Lon protease.	0.517
mnmG_1	ugtP	CLPUN_33720	CLPUN_50620	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG.	Processive diacylglycerol beta-glucosyltransferase.	0.492
pyk_1	lon	CLPUN_14940	CLPUN_34870	Pyruvate kinase; Belongs to the pyruvate kinase family.	Lon protease.	0.414
pyk_1	pyk_2	CLPUN_14940	CLPUN_30880	Pyruvate kinase; Belongs to the pyruvate kinase family.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.741
pyk_1	ttuE	CLPUN_14940	CLPUN_04640	Pyruvate kinase; Belongs to the pyruvate kinase family.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.569