Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM75078.1Hypothetical protein. (415 aa)    
Predicted Functional Partners:
OOM72343.1
Hypothetical protein.
 
     0.739
bepA
Beta-barrel assembly-enhancing protease.
 
    0.711
OOM71294.1
Hypothetical protein.
  
     0.619
cpdA_2
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
  
     0.579
OOM75079.1
Hypothetical protein.
       0.572
OOM77892.1
Beta-monoglucosyldiacylglycerol synthase.
  
  
 0.550
OOM74299.1
DNA polymerase III subunit epsilon.
  
     0.491
OOM82489.1
Tetratricopeptide repeat protein.
 
    0.470
OOM81826.1
Bacterial Ig-like domain protein.
  
     0.462
OOM75099.1
Cna protein B-type domain protein.
  
     0.455
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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