Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM75087.1YabP family protein. (92 aa)    
Predicted Functional Partners:
OOM75088.1
Putative stage IV sporulation protein YqfD.
 
  
 0.993
spoIIM
Stage II sporulation protein M.
  
   
 0.819
OOM80997.1
Stage III sporulation protein AC/AD protein family protein.
  
  
 0.806
OOM80999.1
Stage III sporulation protein SpoAB.
  
  
 0.770
spoIIIAE
Stage III sporulation protein AE precursor.
  
  
 0.739
rny_3
Ribonuclease Y.
 
     0.736
OOM80994.1
Hypothetical protein.
  
  
 0.698
ybeY
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.689
ylbJ
Sporulation integral membrane protein YlbJ.
 
   
 0.682
OOM79799.1
Hypothetical protein.
  
     0.672
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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