Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM75099.1Cna protein B-type domain protein. (1846 aa)    
Predicted Functional Partners:
cpdA_2
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
  
  
  0.640
yesY
Putative rhamnogalacturonan acetylesterase YesY.
     
  0.615
OOM82506.1
Bacterial Ig-like domain protein.
  
  
  0.614
OOM75102.1
Sortase family protein.
 
   
 0.613
OOM82124.1
Bacterial Ig-like domain protein.
  
  
  0.591
OOM81826.1
Bacterial Ig-like domain protein.
  
  
  0.581
OOM76451.1
Hypothetical protein.
  
     0.581
OOM72343.1
Hypothetical protein.
 
 
 0.565
OOM74210.1
Acetyltransferase (GNAT) family protein.
  
     0.552
OOM82616.1
Bacterial Ig-like domain protein.
  
  
  0.550
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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