Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM75112.1Hypothetical protein; Belongs to the 'phage' integrase family. (202 aa)    
Predicted Functional Partners:
xerD_10
Tyrosine recombinase XerD.
 
     0.811
xerC_11
Tyrosine recombinase XerC.
  
     0.746
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.660
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.660
OOM75113.1
Hypothetical protein.
  
    0.589
xre_1
HTH-type transcriptional regulator Xre.
  
    0.538
OOM79271.1
DNA utilization protein GntX.
   
    0.492
ilvC_2
Ketol-acid reductoisomerase.
  
    0.460
whiA
Putative sporulation transcription regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.444
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.420
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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