Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM75119.1Hypothetical protein. (133 aa)    
Predicted Functional Partners:
OOM75118.1
Hypothetical protein.
       0.821
OOM75120.1
Spo0E like sporulation regulatory protein.
       0.709
OOM75121.1
Hypothetical protein.
       0.709
OOM75122.1
Hypothetical protein.
       0.709
OOM75124.1
ERF superfamily protein.
       0.581
OOM75123.1
Hypothetical protein.
       0.565
OOM75117.1
Hypothetical protein.
       0.518
OOM75125.1
Hypothetical protein.
       0.460
spoIIID_1
Stage III sporulation protein D.
       0.460
OOM75116.1
Hypothetical protein; BRO family, N-terminal domain.
       0.459
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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