Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
araC_1Arabinose operon regulatory protein. (270 aa)    
Predicted Functional Partners:
melR_8
Melibiose operon regulatory protein.
 
 
 0.880
adaA_1
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 0.844
rhaS_4
HTH-type transcriptional activator RhaS.
 
 
 0.821
araC_5
Arabinose operon regulatory protein.
 
 
 0.813
tetD_3
Transposon Tn10 TetD protein.
 
 
 0.812
rhaS_6
HTH-type transcriptional activator RhaS.
 
 
 0.810
yesS_1
HTH-type transcriptional regulator YesS.
 
 
 0.808
melR_2
Melibiose operon regulatory protein.
 
 
 0.801
btr_2
HTH-type transcriptional activator Btr.
 
 
 0.788
tetD_1
Transposon Tn10 TetD protein.
 
 
 0.772
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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