Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM74879.1Ferredoxin-2. (264 aa)    
Predicted Functional Partners:
hndC_2
NADP-reducing hydrogenase subunit HndC.
  
 0.993
OOM74513.1
Respiratory-chain NADH dehydrogenase 24 Kd subunit.
  
 0.992
hndC_1
NADP-reducing hydrogenase subunit HndC.
  
 0.992
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 0.976
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 0.976
hndD_1
NADP-reducing hydrogenase subunit HndC.
 
 0.964
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
   
 0.931
OOM76129.1
Iron hydrogenase 1.
 
 
 0.930
sfrB_2
NADPH-Fe(3+) oxidoreductase subunit beta.
   
 0.916
hndA
NADP-reducing hydrogenase subunit HndA.
  
 0.900
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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