Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOM74880.1Putative transporter. (413 aa)    
Predicted Functional Partners:
OOM74881.1
Helix-turn-helix domain protein.
 
     0.643
OOM74879.1
Ferredoxin-2.
    
 0.634
grsB_3
Gramicidin S synthase 2.
  
 
 0.626
metH
Methionine synthase.
   
 
  0.581
pheA
P-protein.
  
 
 0.578
mbtB_1
Phenyloxazoline synthase MbtB.
  
 
 0.539
lgrD_4
Linear gramicidin synthase subunit D.
    
 0.496
hom
Homoserine dehydrogenase.
   
  0.464
metE_1
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.
  
  
 0.444
clsA
Major cardiolipin synthase ClsA; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
  
  
 0.431
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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