STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltD_4Glutamate synthase [NADPH] small chain. (461 aa)    
Predicted Functional Partners:
pyrK_3
Dihydroorotate dehydrogenase B, electron transfer subunit.
 0.999
gltB_1
Ferredoxin-dependent glutamate synthase 1.
 0.999
pyrK_1
Dihydroorotate dehydrogenase B, electron transfer subunit.
 0.995
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
 0.983
hndC_1
NADP-reducing hydrogenase subunit HndC.
   
 0.962
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.938
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.938
gdhA
NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.916
hndC_2
NADP-reducing hydrogenase subunit HndC.
 
 
 0.893
grsB_3
Gramicidin S synthase 2.
    
 0.888
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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