STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrK_3Dihydroorotate dehydrogenase B, electron transfer subunit. (296 aa)    
Predicted Functional Partners:
gltD_4
Glutamate synthase [NADPH] small chain.
 0.999
gltD_1
Glutamate synthase [NADPH] small chain.
 0.995
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
  
 0.992
gltD_5
Glutamate synthase [NADPH] small chain.
 0.982
gltD_3
Glutamate synthase [NADPH] small chain.
 0.981
pyrD
Dihydroorotate dehydrogenase B, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
 
 0.974
gltD_2
Glutamate synthase [NADPH] small chain.
 0.953
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.944
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.944
sfrB_2
NADPH-Fe(3+) oxidoreductase subunit beta.
 0.916
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.