Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
asrAAnaerobic sulfite reductase subunit A. (336 aa)    
Predicted Functional Partners:
asrB
Anaerobic sulfite reductase subunit B.
 
 0.998
asrC
Anaerobic sulfite reductase subunit C; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 0.995
cdr_1
Coenzyme A disulfide reductase.
  
 0.934
cdr_2
Coenzyme A disulfide reductase.
  
 0.934
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.926
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.926
frdA
Fumarate reductase flavoprotein subunit.
 
  
 0.924
nirC_2
Nitrite transporter NirC.
 
   
 0.898
gltB_1
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.897
OOM82251.1
Hypothetical protein.
  
 
 0.856
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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