Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hndD_2NADP-reducing hydrogenase subunit HndC. (386 aa)    
Predicted Functional Partners:
hndC_1
NADP-reducing hydrogenase subunit HndC.
 
 
 0.997
OOM74513.1
Respiratory-chain NADH dehydrogenase 24 Kd subunit.
 
 
 0.996
hndC_2
NADP-reducing hydrogenase subunit HndC.
 
 
 0.994
hndA
NADP-reducing hydrogenase subunit HndA.
 
 0.991
OOM74516.1
Hypothetical protein; Iron only hydrogenase large subunit, C-terminal domain.
 
 
 0.956
hndD_1
NADP-reducing hydrogenase subunit HndC.
 
 
0.883
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
   
 0.862
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
   
 0.862
sfrB_2
NADPH-Fe(3+) oxidoreductase subunit beta.
   
 0.845
OOM73509.1
Ferredoxin, 2Fe-2S.
 
 
 0.831
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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