tcyB_2 protein (Clostridium puniceum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Clostridium puniceum

NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
artM_1	artP	CLPUN_02900	CLPUN_27420	Arginine transport ATP-binding protein ArtM.	Arginine-binding extracellular protein ArtP precursor.	0.924
artM_1	fliY	CLPUN_02900	CLPUN_39660	Arginine transport ATP-binding protein ArtM.	Cystine-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	0.871
artM_1	glnH_1	CLPUN_02900	CLPUN_02870	Arginine transport ATP-binding protein ArtM.	Glutamine-binding periplasmic protein precursor.	0.973
artM_1	glnH_2	CLPUN_02900	CLPUN_02880	Arginine transport ATP-binding protein ArtM.	Glutamine-binding periplasmic protein precursor.	0.992
artM_1	tcyB_2	CLPUN_02900	CLPUN_39650	Arginine transport ATP-binding protein ArtM.	L-cystine transport system permease protein TcyB.	0.957
artM_2	artP	CLPUN_27390	CLPUN_27420	Arginine transport ATP-binding protein ArtM.	Arginine-binding extracellular protein ArtP precursor.	0.994
artM_2	fliY	CLPUN_27390	CLPUN_39660	Arginine transport ATP-binding protein ArtM.	Cystine-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	0.876
artM_2	glnH_1	CLPUN_27390	CLPUN_02870	Arginine transport ATP-binding protein ArtM.	Glutamine-binding periplasmic protein precursor.	0.973
artM_2	glnH_2	CLPUN_27390	CLPUN_02880	Arginine transport ATP-binding protein ArtM.	Glutamine-binding periplasmic protein precursor.	0.972
artM_2	tcyB_2	CLPUN_27390	CLPUN_39650	Arginine transport ATP-binding protein ArtM.	L-cystine transport system permease protein TcyB.	0.957
artP	artM_1	CLPUN_27420	CLPUN_02900	Arginine-binding extracellular protein ArtP precursor.	Arginine transport ATP-binding protein ArtM.	0.924
artP	artM_2	CLPUN_27420	CLPUN_27390	Arginine-binding extracellular protein ArtP precursor.	Arginine transport ATP-binding protein ArtM.	0.994
artP	glnH_1	CLPUN_27420	CLPUN_02870	Arginine-binding extracellular protein ArtP precursor.	Glutamine-binding periplasmic protein precursor.	0.598
artP	glnH_2	CLPUN_27420	CLPUN_02880	Arginine-binding extracellular protein ArtP precursor.	Glutamine-binding periplasmic protein precursor.	0.595
artP	glnQ_1	CLPUN_27420	CLPUN_12720	Arginine-binding extracellular protein ArtP precursor.	Glutamine transport ATP-binding protein GlnQ.	0.916
artP	glnQ_2	CLPUN_27420	CLPUN_13550	Arginine-binding extracellular protein ArtP precursor.	Glutamine transport ATP-binding protein GlnQ.	0.923
artP	glnQ_3	CLPUN_27420	CLPUN_39640	Arginine-binding extracellular protein ArtP precursor.	Glutamine transport ATP-binding protein GlnQ.	0.847
artP	tcyB_2	CLPUN_27420	CLPUN_39650	Arginine-binding extracellular protein ArtP precursor.	L-cystine transport system permease protein TcyB.	0.986
artP	tcyN_1	CLPUN_27420	CLPUN_15510	Arginine-binding extracellular protein ArtP precursor.	L-cystine import ATP-binding protein TcyN.	0.875
fliY	artM_1	CLPUN_39660	CLPUN_02900	Cystine-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.	Arginine transport ATP-binding protein ArtM.	0.871