Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM74186.1Hypothetical protein. (314 aa)    
Predicted Functional Partners:
OOM79656.1
Hypothetical protein.
  
     0.692
OOM69967.1
Hypothetical protein.
  
    0.588
OOM76113.1
Hypothetical protein.
  
     0.542
OOM71483.1
Hypothetical protein.
  
     0.523
puuB
Gamma-glutamylputrescine oxidoreductase.
 
     0.488
OOM75714.1
Peptidase propeptide and YPEB domain protein.
  
     0.488
OOM74185.1
Hypothetical protein.
       0.485
OOM71481.1
Hypothetical protein.
  
     0.484
OOM77380.1
YmaF family protein.
  
     0.479
bamD
Outer membrane protein assembly factor BamD.
  
     0.468
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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