Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OOM74192.1Hypothetical protein; NfeD-like C-terminal, partner-binding. (165 aa)    
Predicted Functional Partners:
OOM74193.1
sigmaW regulon antibacterial.
 
  
 0.992
OOM74194.1
Hypothetical protein.
       0.725
ypdB_2
Transcriptional regulatory protein YpdB.
       0.694
dpiB
Sensor histidine kinase DpiB.
       0.595
OOM77557.1
SPFH domain / band 7 family protein.
   
    0.514
OOM73865.1
Hypothetical protein.
   
    0.514
OOM73866.1
Hypothetical protein.
   
    0.514
ecsA
ABC-type transporter ATP-binding protein EcsA.
   
    0.412
recD2
ATP-dependent RecD-like DNA helicase; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
   
    0.411
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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