Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OOM74073.1Enterobactin exporter EntS. (432 aa)    
Predicted Functional Partners:
OOM73498.1
Hypothetical protein.
  
  
 0.595
OOM74881.1
Helix-turn-helix domain protein.
  
     0.542
grsB_3
Gramicidin S synthase 2.
     
 0.531
betI_2
HTH-type transcriptional regulator BetI.
  
     0.474
OOM75917.1
Hypothetical protein.
  
     0.471
ycdT_1
Putative diguanylate cyclase YcdT.
  
  
 0.430
OOM74077.1
Major facilitator superfamily protein.
    
 0.428
ymfD
Bacillibactin exporter.
    
 0.428
OOM76869.1
Major facilitator superfamily protein.
  
  
 0.415
tcmN
Multifunctional cyclase-dehydratase-3-O-methyl transferase TcmN.
  
     0.408
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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