Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM74088.1Xylose isomerase-like TIM barrel. (351 aa)    
Predicted Functional Partners:
OOM74085.1
Hypothetical protein.
 
     0.887
OOM74206.1
Hypothetical protein.
 
 
 0.848
OOM74087.1
Hypothetical protein.
       0.789
OOM74212.1
Hypothetical protein.
 
 
 0.767
OOM79331.1
Putative endoglucanase.
  
  
  0.764
fruA_1
PTS system fructose-specific EIIABC component.
  
 
  0.758
fruA_3
PTS system fructose-specific EIIABC component.
  
 
  0.758
ycjS_1
Putative oxidoreductase YcjS.
 
 
 0.753
sgcG_3
2-amino-4-deoxychorismate dehydrogenase.
 
     0.746
ycjS_3
Putative oxidoreductase YcjS.
 
 
 0.726
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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