Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
iolWScyllo-inositol 2-dehydrogenase. (353 aa)    
Predicted Functional Partners:
iolE
Inosose dehydratase.
 
 
 0.797
OOM74085.1
Hypothetical protein.
 
 
 0.771
ycjS_1
Putative oxidoreductase YcjS.
  
     0.747
ycjS_3
Putative oxidoreductase YcjS.
 
    
0.746
OOM74212.1
Hypothetical protein.
  
     0.740
OOM74086.1
Xylose isomerase-like TIM barrel.
 
 
 0.739
OOM74088.1
Xylose isomerase-like TIM barrel.
 
 
 0.726
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.721
OOM74209.1
Xylose isomerase-like TIM barrel.
 
 
 0.647
yhhX_2
Putative oxidoreductase YhhX.
  
     0.632
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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