yxeP_6 protein (Clostridium puniceum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

yxeP_6

Putative hydrolase YxeP. (393 aa)

Predicted Functional Partners:

gltB_1

0.788

yxeP_1

0.734

dapH_1

0.613

dapF

0.543

pucF

0.533

ftsA_1

0.483

purL

0.457

spoVB_2

0.450

cssS

0.445

rluC

0.443

Your Current Organism:

Clostridium puniceum

NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cssS	yxeP_6	CLPUN_48260	CLPUN_42490	Sensor histidine kinase CssS.	Putative hydrolase YxeP.	0.445
dapF	dapH_1	CLPUN_11790	CLPUN_22540	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.	0.581
dapF	gltB_1	CLPUN_11790	CLPUN_45950	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	Ferredoxin-dependent glutamate synthase 1.	0.938
dapF	pucF	CLPUN_11790	CLPUN_24630	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	Allantoate amidohydrolase.	0.727
dapF	purL	CLPUN_11790	CLPUN_39620	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	Phosphoribosylformylglycinamidine synthase.	0.510
dapF	yxeP_1	CLPUN_11790	CLPUN_15670	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	Putative hydrolase YxeP.	0.455
dapF	yxeP_6	CLPUN_11790	CLPUN_42490	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	Putative hydrolase YxeP.	0.543
dapH_1	dapF	CLPUN_22540	CLPUN_11790	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	0.581
dapH_1	yxeP_1	CLPUN_22540	CLPUN_15670	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.	Putative hydrolase YxeP.	0.466
dapH_1	yxeP_6	CLPUN_22540	CLPUN_42490	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.	Putative hydrolase YxeP.	0.613
ftsA_1	rluC	CLPUN_42480	CLPUN_42500	Cell division protein FtsA.	Ribosomal large subunit pseudouridine synthase C; Belongs to the pseudouridine synthase RluA family.	0.481
ftsA_1	spoVB_2	CLPUN_42480	CLPUN_42510	Cell division protein FtsA.	Stage V sporulation protein B.	0.478
ftsA_1	yxeP_6	CLPUN_42480	CLPUN_42490	Cell division protein FtsA.	Putative hydrolase YxeP.	0.483
gltB_1	dapF	CLPUN_45950	CLPUN_11790	Ferredoxin-dependent glutamate synthase 1.	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	0.938
gltB_1	pucF	CLPUN_45950	CLPUN_24630	Ferredoxin-dependent glutamate synthase 1.	Allantoate amidohydrolase.	0.530
gltB_1	purL	CLPUN_45950	CLPUN_39620	Ferredoxin-dependent glutamate synthase 1.	Phosphoribosylformylglycinamidine synthase.	0.904
gltB_1	yxeP_1	CLPUN_45950	CLPUN_15670	Ferredoxin-dependent glutamate synthase 1.	Putative hydrolase YxeP.	0.788
gltB_1	yxeP_6	CLPUN_45950	CLPUN_42490	Ferredoxin-dependent glutamate synthase 1.	Putative hydrolase YxeP.	0.788
pucF	dapF	CLPUN_24630	CLPUN_11790	Allantoate amidohydrolase.	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	0.727
pucF	gltB_1	CLPUN_24630	CLPUN_45950	Allantoate amidohydrolase.	Ferredoxin-dependent glutamate synthase 1.	0.530