Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OOM73850.1Subtilase family protein. (578 aa)    
Predicted Functional Partners:
OOM74780.1
Putative peptidoglycan binding domain protein.
 
  
 0.801
OOM82109.1
Collagen triple helix repeat.
 
 0.742
OOM71124.1
LysM domain protein.
 
 
 0.710
OOM82462.1
Hypothetical protein.
  
 0.698
OOM82497.1
Collagen triple helix repeat.
  
 0.698
OOM82499.1
Hypothetical protein.
  
 0.698
OOM82123.1
Collagen triple helix repeat.
  
 0.698
OOM80651.1
Hypothetical protein.
  
 0.698
wapA
tRNA3(Ser)-specific nuclease WapA precursor.
  
 0.698
OOM78358.1
Hypothetical protein.
  
 0.698
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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