recQ_2 protein (Clostridium puniceum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Clostridium puniceum

NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cshA_3	pcrA	CLPUN_46930	CLPUN_21430	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	ATP-dependent DNA helicase PcrA.	0.466
cshA_3	polA_2	CLPUN_46930	CLPUN_38140	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.453
cshA_3	recQ_2	CLPUN_46930	CLPUN_43040	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	ATP-dependent DNA helicase RecQ.	0.857
cshA_3	rhlE	CLPUN_46930	CLPUN_30240	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	0.755
cshA_3	topA	CLPUN_46930	CLPUN_47640	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.528
cshA_3	topB_2	CLPUN_46930	CLPUN_25000	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	DNA topoisomerase 3.	0.528
cshA_3	topB_3	CLPUN_46930	CLPUN_27030	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	DNA topoisomerase 3; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.481
cshA_3	uvrD	CLPUN_46930	CLPUN_52020	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	DNA helicase II.	0.466
cshA_3	yjcD	CLPUN_46930	CLPUN_32210	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Putative ATP-dependent DNA helicase YjcD.	0.482
pcrA	cshA_3	CLPUN_21430	CLPUN_46930	ATP-dependent DNA helicase PcrA.	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	0.466
pcrA	polA_2	CLPUN_21430	CLPUN_38140	ATP-dependent DNA helicase PcrA.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.866
pcrA	recA	CLPUN_21430	CLPUN_47040	ATP-dependent DNA helicase PcrA.	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.859
pcrA	recQ_2	CLPUN_21430	CLPUN_43040	ATP-dependent DNA helicase PcrA.	ATP-dependent DNA helicase RecQ.	0.825
pcrA	rhlE	CLPUN_21430	CLPUN_30240	ATP-dependent DNA helicase PcrA.	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	0.466
pcrA	topA	CLPUN_21430	CLPUN_47640	ATP-dependent DNA helicase PcrA.	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.759
pcrA	topB_2	CLPUN_21430	CLPUN_25000	ATP-dependent DNA helicase PcrA.	DNA topoisomerase 3.	0.706
pcrA	topB_3	CLPUN_21430	CLPUN_27030	ATP-dependent DNA helicase PcrA.	DNA topoisomerase 3; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.633
pcrA	uvrD	CLPUN_21430	CLPUN_52020	ATP-dependent DNA helicase PcrA.	DNA helicase II.	0.700
pcrA	yjcD	CLPUN_21430	CLPUN_32210	ATP-dependent DNA helicase PcrA.	Putative ATP-dependent DNA helicase YjcD.	0.922
polA_2	cshA_3	CLPUN_38140	CLPUN_46930	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	0.453