Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnpRTransposon Tn3 resolvase. (77 aa)    
Predicted Functional Partners:
hin_3
DNA-invertase hin.
  
     0.774
hin_2
DNA-invertase hin.
  
     0.773
hin_5
DNA-invertase hin.
  
     0.689
hin_1
DNA-invertase hin.
  
     0.468
OOM73696.1
Hypothetical protein; Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.
  
    0.428
hin_4
DNA-invertase hin.
  
     0.422
dsbD
Thiol:disulfide interchange protein DsbD precursor.
   
    0.417
OOM73808.1
Hypothetical protein.
     
 0.412
OOM73995.1
Hypothetical protein.
   
    0.411
OOM81776.1
Phage terminase small subunit.
   
    0.409
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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