Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
ypdA_6Sensor histidine kinase YpdA. (611 aa)    
Predicted Functional Partners:
OOM73809.1
Putative response regulatory protein.
 
 
 0.953
lytR_3
Sensory transduction protein LytR.
 
 
 0.860
OOM75162.1
Putative response regulatory protein.
 
 
 0.791
OOM76271.1
Putative response regulatory protein.
 
 
 0.782
ypdB_2
Transcriptional regulatory protein YpdB.
 
 
 0.778
rpfC
Sensory/regulatory protein RpfC.
    
 0.777
OOM73498.1
Hypothetical protein.
   
  0.773
lytR_2
Sensory transduction protein LytR.
 
 
 0.766
yesS_2
HTH-type transcriptional regulator YesS.
 
 
 0.756
OOM82460.1
Putative response regulatory protein.
 
 
 0.755
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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