Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yajRInner membrane transport protein YajR. (403 aa)    
Predicted Functional Partners:
pheA
P-protein.
 
 
 0.632
OOM73825.1
Hypothetical protein.
  
 
 0.627
grsB_3
Gramicidin S synthase 2.
  
 
 0.626
metH
Methionine synthase.
   
 
  0.581
mbtB_1
Phenyloxazoline synthase MbtB.
  
 
 0.539
lgrD_4
Linear gramicidin synthase subunit D.
    
 0.496
OOM76655.1
CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
 
  0.470
hom
Homoserine dehydrogenase.
   
  0.464
racX
Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family.
  
 
  0.459
OOM73823.1
Division inhibitor protein.
     
 0.453
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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