STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
melR_7Melibiose operon regulatory protein. (296 aa)    
Predicted Functional Partners:
melR_8
Melibiose operon regulatory protein.
  
 
   0.793
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 0.749
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.723
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.723
rhaS_2
HTH-type transcriptional activator RhaS.
  
   0.706
btr_2
HTH-type transcriptional activator Btr.
  
     0.650
rob_1
Right origin-binding protein.
  
     0.617
yesS_4
HTH-type transcriptional regulator YesS.
 
  
0.587
rob_2
Right origin-binding protein.
  
     0.576
ypdA_5
Sensor histidine kinase YpdA.
  
  
 0.569
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.