Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
soxS_2Regulatory protein SoxS. (334 aa)    
Predicted Functional Partners:
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 0.749
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.723
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.723
OOM74874.1
Hypothetical protein.
 
    0.664
OOM75735.1
Putative multidrug export ATP-binding/permease protein.
 
    0.656
hepA_2
Heterocyst differentiation ATP-binding protein HepA.
 
    0.632
ykoD
Putative HMP/thiamine import ATP-binding protein YkoD.
 
     0.611
ribBA_1
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.605
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
 
     0.601
msbA_2
Lipid A export ATP-binding/permease protein MsbA.
 
    0.593
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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