STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
licR_5Putative licABCH operon regulator. (639 aa)    
Predicted Functional Partners:
fruA_1
PTS system fructose-specific EIIABC component.
  
 
 0.970
fruA_3
PTS system fructose-specific EIIABC component.
  
 
 0.970
licR_4
Putative licABCH operon regulator.
 
 
0.958
licR_3
Putative licABCH operon regulator.
 
 
0.956
licB_8
Lichenan-specific phosphotransferase enzyme IIB component.
 
  
 0.934
uxaB
Altronate oxidoreductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
  
 
 0.878
sacX
Negative regulator of SacY activity.
 
 0.874
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
 
 0.868
bglF_12
PTS system beta-glucoside-specific EIIBCA component.
 
 0.867
ulaB
Ascorbate-specific phosphotransferase enzyme IIB component.
 
 
 0.866
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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