Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
licR_6Putative licABCH operon regulator. (632 aa)    
Predicted Functional Partners:
fruA_1
PTS system fructose-specific EIIABC component.
  
 
 0.961
fruA_3
PTS system fructose-specific EIIABC component.
  
 
 0.961
licR_3
Putative licABCH operon regulator.
 
 
0.941
licR_4
Putative licABCH operon regulator.
 
 
0.941
licB_9
Lichenan-specific phosphotransferase enzyme IIB component.
 
  
 0.907
ulaB
Ascorbate-specific phosphotransferase enzyme IIB component.
 
 
 0.879
uxaB
Altronate oxidoreductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
  
 
 0.872
licC_8
Lichenan permease IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
  
 0.866
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
 
 0.839
licA_9
Lichenan-specific phosphotransferase enzyme IIA component.
 
  
 0.837
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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