Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM73705.1Hypothetical protein. (106 aa)    
Predicted Functional Partners:
grsB_3
Gramicidin S synthase 2.
  
 
 0.626
metH
Methionine synthase.
   
 
  0.581
pheA
P-protein.
  
 
 0.578
mbtB_1
Phenyloxazoline synthase MbtB.
  
 
 0.539
lgrD_4
Linear gramicidin synthase subunit D.
    
 0.496
hom
Homoserine dehydrogenase.
   
  0.464
ilvK
Branched-chain-amino-acid aminotransferase 2.
  
 
  0.460
patB
Cystathionine beta-lyase PatB.
  
  
 0.449
OOM70581.1
Replication initiation factor.
  
  
 0.442
licR_6
Putative licABCH operon regulator.
     
 0.439
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.