STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpA_5Sn-glycerol-3-phosphate transport system permease protein UgpA. (314 aa)    
Predicted Functional Partners:
yesO_4
Putative ABC transporter substrate-binding protein YesO.
 0.997
araQ_10
L-arabinose transport system permease protein AraQ.
 0.985
ugpC_1
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 0.983
ugpC_2
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 0.983
malG_1
Maltose transport system permease protein MalG.
 0.981
malG_2
Maltose transport system permease protein MalG.
 0.981
lacG
Lactose transport system permease protein LacG.
 0.963
sugB
Trehalose transport system permease protein SugB.
 
 0.960
araQ_12
L-arabinose transport system permease protein AraQ.
 
 0.954
araQ_1
L-arabinose transport system permease protein AraQ.
 
 0.952
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.