Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nifB_3FeMo cofactor biosynthesis protein NifB. (925 aa)    
Predicted Functional Partners:
nifH1_2
Nitrogenase iron protein 1; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
 0.986
nifH1_1
Nitrogenase iron protein 1; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
 0.982
nifD_5
Nitrogenase molybdenum-iron protein alpha chain; Belongs to the NifD/NifK/NifE/NifN family.
  
0.907
glnB_2
Nitrogen regulatory protein P-II.
 
 
 0.902
nifB_1
FeMo cofactor biosynthesis protein NifB.
 
 
0.812
glnB_3
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 
 0.796
OOM73500.1
Iron only nitrogenase protein AnfO.
 
   
 0.792
OOM74815.1
Iron only nitrogenase protein AnfO.
 
   
 0.773
OOM73501.1
Hypothetical protein.
 
     0.767
OOM73510.1
Homocitrate synthase.
 
  
 0.763
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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