Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOM73396.1CAAX amino terminal protease self- immunity. (311 aa)    
Predicted Functional Partners:
lytB_2
Putative endo-beta-N-acetylglucosaminidase precursor.
   
 
 0.649
OOM73397.1
Hypothetical protein.
       0.516
ybhS
Inner membrane transport permease YbhS.
   
  
 0.485
OOM79028.1
ABC-2 family transporter protein.
   
  
 0.485
ybhR
Inner membrane transport permease YbhR.
   
  
 0.485
yxlF_4
Putative ABC transporter ATP-binding protein YxlF.
 
 
 0.474
yxlF_6
Putative ABC transporter ATP-binding protein YxlF.
 
 
 0.474
skfE
SkfA peptide export ATP-binding protein SkfE.
  
 
 0.441
OOM80230.1
Ferredoxin.
  
    0.432
OOM74879.1
Ferredoxin-2.
  
    0.432
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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