STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOM72912.1Hypothetical protein. (349 aa)    
Predicted Functional Partners:
OOM72910.1
Phage minor structural protein GP20.
 
     0.893
OOM72919.1
Phage tail sheath protein.
 
     0.799
OOM72914.1
Hypothetical protein.
       0.785
OOM72911.1
Hypothetical protein.
       0.766
xkdM_3
Phage-like element PBSX protein XkdM.
 
     0.751
tuaE
Teichuronic acid biosynthesis protein TuaE.
  
     0.749
OOM77574.1
HIRAN domain protein.
  
     0.727
lytA_14
Autolysin.
  
     0.716
OOM75287.1
Hypothetical protein.
  
     0.713
OOM70871.1
Bacterial dynamin-like protein.
  
     0.712
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.