Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
prkC_2Serine/threonine-protein kinase PrkC. (637 aa)    
Predicted Functional Partners:
stp_3
Serine/threonine phosphatase stp.
 
 0.995
fhaB
FHA domain-containing protein FhaB.
 
 
 
 0.962
stp_2
Serine/threonine phosphatase stp.
 
 
 0.922
rsmB
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.898
OOM75203.1
Hypothetical protein.
  
 
 0.897
OOM75200.1
FHA domain protein.
   
 
 0.893
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
   
 0.882
rlmN
Putative dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
  
  
 0.874
barA_3
Signal transduction histidine-protein kinase BarA.
   
 0.868
barA_4
Signal transduction histidine-protein kinase BarA.
   
 0.868
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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