Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM72327.1Putative amidase domain protein. (328 aa)    
Predicted Functional Partners:
OOM77574.1
HIRAN domain protein.
  
     0.604
OOM82033.1
Hypothetical protein.
  
     0.603
OOM71857.1
Putative amidase domain protein.
 
     0.585
OOM75281.1
Endodeoxyribonuclease RusA.
   
    0.579
OOM70871.1
Bacterial dynamin-like protein.
  
     0.566
pelX_2
Pectate disaccharide-lyase precursor.
  
     0.525
OOM74339.1
O-antigen ligase.
  
     0.523
tuaE
Teichuronic acid biosynthesis protein TuaE.
  
     0.522
OOM81860.1
Hypothetical protein.
  
     0.521
OOM78549.1
Hypothetical protein.
  
     0.503
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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