Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
buk2_4Butyrate kinase 2; Belongs to the acetokinase family. (356 aa)    
Predicted Functional Partners:
pta_1
Phosphate acetyltransferase.
 
 0.977
pta_2
Phosphate acetyltransferase.
 
 0.972
pta_3
Phosphate acetyltransferase.
 
 0.847
gdhA
NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.679
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.636
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.636
buk2_3
Butyrate kinase 2; Belongs to the acetokinase family.
     
  0.617
atoD_1
Acetate CoA-transferase subunit alpha.
     
 0.538
atoD_2
Acetate CoA-transferase subunit alpha.
     
 0.538
ctfA
Butyrate--acetoacetate CoA-transferase subunit A.
     
 0.538
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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