Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM71857.1Putative amidase domain protein. (370 aa)    
Predicted Functional Partners:
OOM71856.1
Hypothetical protein.
 
     0.836
OOM71269.1
MazG-like family protein.
  
     0.736
rcsC_1
Sensor histidine kinase RcsC.
  
     0.713
OOM81053.1
YtxC-like family protein.
  
     0.676
OOM77577.1
Hypothetical protein.
  
     0.668
ssbB
Single-stranded DNA-binding protein B.
  
     0.639
OOM81646.1
Hypothetical protein.
  
     0.638
OOM71124.1
LysM domain protein.
  
     0.621
OOM81054.1
Hypothetical protein.
  
     0.619
OOM72327.1
Putative amidase domain protein.
 
     0.585
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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