soj_4 protein (Clostridium puniceum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

soj_4

Sporulation initiation inhibitor protein Soj. (253 aa)

Predicted Functional Partners:

parB

0.995

noc

0.960

spo0C_1

0.922

spo0C_2

0.881

dnaA_2

0.866

OOM71814.1

0.846

OOM79816.1

0.708

rsmG

0.668

spoIIIE

0.661

misCA

0.628

Your Current Organism:

Clostridium puniceum

NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OOM71814.1	misCA	CLPUN_48820	CLPUN_48900	Hypothetical protein.	Membrane protein insertase MisCA precursor.	0.416
OOM71814.1	noc	CLPUN_48820	CLPUN_48850	Hypothetical protein.	Nucleoid occlusion protein; Belongs to the ParB family.	0.548
OOM71814.1	parB	CLPUN_48820	CLPUN_48830	Hypothetical protein.	Putative chromosome-partitioning protein ParB; Belongs to the ParB family.	0.868
OOM71814.1	rsmG	CLPUN_48820	CLPUN_48860	Hypothetical protein.	Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.444
OOM71814.1	soj_4	CLPUN_48820	CLPUN_48840	Hypothetical protein.	Sporulation initiation inhibitor protein Soj.	0.846
OOM79816.1	rsmG	CLPUN_14970	CLPUN_48860	Hypothetical protein.	Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.671
OOM79816.1	soj_4	CLPUN_14970	CLPUN_48840	Hypothetical protein.	Sporulation initiation inhibitor protein Soj.	0.708
dnaA_2	misCA	CLPUN_48930	CLPUN_48900	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	Membrane protein insertase MisCA precursor.	0.407
dnaA_2	noc	CLPUN_48930	CLPUN_48850	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	Nucleoid occlusion protein; Belongs to the ParB family.	0.513
dnaA_2	parB	CLPUN_48930	CLPUN_48830	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	Putative chromosome-partitioning protein ParB; Belongs to the ParB family.	0.668
dnaA_2	soj_4	CLPUN_48930	CLPUN_48840	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	Sporulation initiation inhibitor protein Soj.	0.866
dnaA_2	spoIIIE	CLPUN_48930	CLPUN_47010	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	DNA translocase SpoIIIE.	0.560
misCA	OOM71814.1	CLPUN_48900	CLPUN_48820	Membrane protein insertase MisCA precursor.	Hypothetical protein.	0.416
misCA	dnaA_2	CLPUN_48900	CLPUN_48930	Membrane protein insertase MisCA precursor.	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	0.407
misCA	noc	CLPUN_48900	CLPUN_48850	Membrane protein insertase MisCA precursor.	Nucleoid occlusion protein; Belongs to the ParB family.	0.689
misCA	parB	CLPUN_48900	CLPUN_48830	Membrane protein insertase MisCA precursor.	Putative chromosome-partitioning protein ParB; Belongs to the ParB family.	0.587
misCA	rsmG	CLPUN_48900	CLPUN_48860	Membrane protein insertase MisCA precursor.	Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.866
misCA	soj_4	CLPUN_48900	CLPUN_48840	Membrane protein insertase MisCA precursor.	Sporulation initiation inhibitor protein Soj.	0.628
noc	OOM71814.1	CLPUN_48850	CLPUN_48820	Nucleoid occlusion protein; Belongs to the ParB family.	Hypothetical protein.	0.548
noc	dnaA_2	CLPUN_48850	CLPUN_48930	Nucleoid occlusion protein; Belongs to the ParB family.	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.	0.513