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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxB_5Thioredoxin reductase. (288 aa)    
Predicted Functional Partners:
trxA_2
Thioredoxin; Belongs to the thioredoxin family.
 
 0.976
trxB_1
Thioredoxin reductase.
 
0.967
trxA_1
Thioredoxin; Belongs to the thioredoxin family.
 
 0.966
ahpC
Alkyl hydroperoxide reductase subunit C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.918
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 0.888
sufS_1
Cysteine desulfurase SufS.
 
 
 0.875
trxB_2
Thioredoxin reductase.
  
  
 
0.857
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
     
 0.855
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
  
 
 0.835
cdr_1
Coenzyme A disulfide reductase.
  
 
 0.762
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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