Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOM71633.1Putative 3-phenylpropionic acid transporter. (388 aa)    
Predicted Functional Partners:
pheA
P-protein.
 
 
 0.628
grsB_3
Gramicidin S synthase 2.
  
 
 0.626
metH
Methionine synthase.
   
 
  0.581
mbtB_1
Phenyloxazoline synthase MbtB.
  
 
 0.539
licR_3
Putative licABCH operon regulator.
  
   
 0.519
lgrD_4
Linear gramicidin synthase subunit D.
    
 0.496
patB
Cystathionine beta-lyase PatB.
     
 0.468
hom
Homoserine dehydrogenase.
   
  0.468
OOM77270.1
Galactoside permease.
  
   
 0.457
OOM81977.1
Hypothetical protein; Belongs to the UPF0735 family.
  
  
  0.439
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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