Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
yicI_3Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family. (783 aa)    
Predicted Functional Partners:
bgaA
Beta-galactosidase BgaA.
 
 
 0.776
ganA
Beta-galactosidase GanA.
 
 
 0.743
agaA
Alpha-galactosidase A precursor.
 
  
  0.692
OOM82463.1
Beta-glucosidase BoGH3A precursor.
 
 
 0.691
bglK_3
Beta-glucoside kinase.
  
 
 0.689
kdgK_2
2-dehydro-3-deoxygluconokinase.
  
 
 0.649
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.641
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
   
 
 0.641
amyE
Alpha-amylase precursor.
    
 0.635
dnaJ_1
Chaperone protein DnaJ.
   
 
 0.625
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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