Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM71470.1Hypothetical protein. (579 aa)    
Predicted Functional Partners:
OOM72287.1
Hypothetical protein; Belongs to the UPF0109 family.
   
 
 0.807
OOM74339.1
O-antigen ligase.
 
    0.756
OOM73776.1
Putative RNA polymerase sigma factor SigI.
 
     0.718
misCA
Membrane protein insertase MisCA precursor.
  
  
 0.718
tuaE
Teichuronic acid biosynthesis protein TuaE.
 
    0.711
rng
Ribonuclease G.
   
 
 0.701
flhF
Flagellar biosynthesis protein FlhF.
 
   
 0.691
fliM
Flagellar motor switch protein FliM.
 
 
   0.686
OOM81816.1
Signal peptidase (SPase) II.
  
     0.682
OOM82033.1
Hypothetical protein.
  
     0.677
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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