Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbr3B_2Reverse rubrerythrin-2. (181 aa)    
Predicted Functional Partners:
OOM71480.1
Hypothetical protein.
 
     0.722
rbr3B_3
Reverse rubrerythrin-2.
  
     0.600
hndC_2
NADP-reducing hydrogenase subunit HndC.
    
 0.597
OOM74513.1
Respiratory-chain NADH dehydrogenase 24 Kd subunit.
    
 0.588
hndC_1
NADP-reducing hydrogenase subunit HndC.
    
 0.588
rbr3B_1
Reverse rubrerythrin-2.
  
     0.583
mmgC
acyl-CoA dehydrogenase.
  
 
 0.522
hndD_1
NADP-reducing hydrogenase subunit HndC.
    
 0.522
OOM74516.1
Hypothetical protein; Iron only hydrogenase large subunit, C-terminal domain.
    
 0.519
OOM80230.1
Ferredoxin.
 
  
 0.513
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.