Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rtcBRNA-splicing ligase RtcB. (407 aa)    
Predicted Functional Partners:
OOM71484.1
Putative nucleotidyltransferase.
 
    0.824
OOM71481.1
Hypothetical protein.
     0.804
OOM71487.1
60 kDa SS-A/Ro ribonucleoprotein homolog.
 
     0.792
OOM71486.1
Hypothetical protein.
       0.693
cshA_1
DEAD-box ATP-dependent RNA helicase CshA.
   
 0.646
rhlE
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
   
 0.646
cshA_2
DEAD-box ATP-dependent RNA helicase CshA.
   
 0.646
dbpA_2
ATP-dependent RNA helicase DbpA; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind short rRNA duplexes.
   
 0.646
cshA_3
DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.
   
 0.646
OOM71483.1
Hypothetical protein.
 
     0.636
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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