Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OOM71487.160 kDa SS-A/Ro ribonucleoprotein homolog. (483 aa)    
Predicted Functional Partners:
rtcB
RNA-splicing ligase RtcB.
 
     0.792
OOM71484.1
Putative nucleotidyltransferase.
 
     0.778
kptA
RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
  
     0.682
OOM73432.1
Hypothetical protein.
 
     0.645
OOM71486.1
Hypothetical protein.
       0.642
rpfG_7
Cyclic di-GMP phosphodiesterase response regulator RpfG.
     
  0.617
OOM80647.1
VWA domain containing CoxE-like protein.
 
  
  0.558
OOM81507.1
Hypothetical protein.
  
     0.542
ybiA
Swarming motility protein YbiA.
 
     0.534
OOM71483.1
Hypothetical protein.
 
     0.482
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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