speG protein (Clostridium puniceum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

speG

Spermidine N(1)-acetyltransferase. (166 aa)

Predicted Functional Partners:

rebO_2

0.828

nifJ_1

0.816

nifJ_2

0.816

patA_2

0.796

speE

0.774

gltB_1

0.762

addB

0.716

pheA

0.699

rebO_1

0.663

OOM75961.1

0.655

Your Current Organism:

Clostridium puniceum

NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OOM75961.1	gltB_1	CLPUN_29980	CLPUN_45950	N-carbamoyl-D-amino acid hydrolase.	Ferredoxin-dependent glutamate synthase 1.	0.876
OOM75961.1	nifJ_1	CLPUN_29980	CLPUN_20720	N-carbamoyl-D-amino acid hydrolase.	Pyruvate-flavodoxin oxidoreductase.	0.827
OOM75961.1	nifJ_2	CLPUN_29980	CLPUN_42950	N-carbamoyl-D-amino acid hydrolase.	Pyruvate-flavodoxin oxidoreductase.	0.827
OOM75961.1	patA_2	CLPUN_29980	CLPUN_07240	N-carbamoyl-D-amino acid hydrolase.	Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.793
OOM75961.1	pheA	CLPUN_29980	CLPUN_23930	N-carbamoyl-D-amino acid hydrolase.	P-protein.	0.683
OOM75961.1	rebO_1	CLPUN_29980	CLPUN_05110	N-carbamoyl-D-amino acid hydrolase.	Flavin-dependent L-tryptophan oxidase RebO precursor.	0.487
OOM75961.1	rebO_2	CLPUN_29980	CLPUN_10660	N-carbamoyl-D-amino acid hydrolase.	Flavin-dependent L-tryptophan oxidase RebO precursor.	0.487
OOM75961.1	speE	CLPUN_29980	CLPUN_34340	N-carbamoyl-D-amino acid hydrolase.	Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.	0.834
OOM75961.1	speG	CLPUN_29980	CLPUN_49580	N-carbamoyl-D-amino acid hydrolase.	Spermidine N(1)-acetyltransferase.	0.655
addB	speG	CLPUN_49590	CLPUN_49580	ATP-dependent helicase/deoxyribonuclease subunit B; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily.	Spermidine N(1)-acetyltransferase.	0.716
gltB_1	OOM75961.1	CLPUN_45950	CLPUN_29980	Ferredoxin-dependent glutamate synthase 1.	N-carbamoyl-D-amino acid hydrolase.	0.876
gltB_1	nifJ_1	CLPUN_45950	CLPUN_20720	Ferredoxin-dependent glutamate synthase 1.	Pyruvate-flavodoxin oxidoreductase.	0.941
gltB_1	nifJ_2	CLPUN_45950	CLPUN_42950	Ferredoxin-dependent glutamate synthase 1.	Pyruvate-flavodoxin oxidoreductase.	0.941
gltB_1	patA_2	CLPUN_45950	CLPUN_07240	Ferredoxin-dependent glutamate synthase 1.	Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.664
gltB_1	pheA	CLPUN_45950	CLPUN_23930	Ferredoxin-dependent glutamate synthase 1.	P-protein.	0.633
gltB_1	speG	CLPUN_45950	CLPUN_49580	Ferredoxin-dependent glutamate synthase 1.	Spermidine N(1)-acetyltransferase.	0.762
nifJ_1	OOM75961.1	CLPUN_20720	CLPUN_29980	Pyruvate-flavodoxin oxidoreductase.	N-carbamoyl-D-amino acid hydrolase.	0.827
nifJ_1	gltB_1	CLPUN_20720	CLPUN_45950	Pyruvate-flavodoxin oxidoreductase.	Ferredoxin-dependent glutamate synthase 1.	0.941
nifJ_1	nifJ_2	CLPUN_20720	CLPUN_42950	Pyruvate-flavodoxin oxidoreductase.	Pyruvate-flavodoxin oxidoreductase.	0.999
nifJ_1	patA_2	CLPUN_20720	CLPUN_07240	Pyruvate-flavodoxin oxidoreductase.	Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.572