Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM71439.1Hypothetical protein. (197 aa)    
Predicted Functional Partners:
OOM71440.1
hemolysin-III related.
 
  
 0.849
gltB_1
Ferredoxin-dependent glutamate synthase 1.
     
 0.801
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.687
OOM79775.1
Hypothetical protein.
  
     0.646
glnA_1
Glutamine synthetase.
  
 
 0.615
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.580
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.569
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
   
 0.563
ybiT_3
Putative ABC transporter ATP-binding protein YbiT.
 
     0.563
OOM81937.1
Hypothetical protein.
  
     0.560
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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